Hello;
The only concern you need to have is the number of IRQs available. As far as DMA channels, as the PCI bus itself has only 3 DMA channels available, all the devices that use DMA will share those 3 channels. But, as IRQs can't be shared, the number of counters you will be able to use will be the exact number of available IRQs you still have on your machine.
As far as transfer rate, the maximum transfer rate will be 2000 Readings/sec, regardless the number of counters you are using.
Hope this helps.
Filipe