Hi Achim,
Typically, frequency measurements are made using two counters for increased accuracy. However, you can measure frequency using 1 counter and taking the inverse of the period measurement. You would just need to apply this to 4 counters. There should be a shipping example with the NI-DAQ driver that performs this. Here is a link to an excellent tutorial on frequency measurement.
Making Accurate Frequency Measurements
http://zone.ni.com/devzone/conceptd.nsf/webmain/CD2C8AAED8FA59A486256C230078FE75?opendocument
This being said, what I suggest in your case is to use a 6602 counter/timer board with 8 counters, 2 for each frequency measurement. Using a 660x board, you can also use triggering to simultaneously start all counters. This can be
done by routing a signal from the PFI line to the counter trigger using Route Signal.vi in LabVIEW or Select_Signal() in C function calls. Then you would setup a trigger and reference the common trigger signal that you routed the PFI line to. The following discussion thread might be useful:
Counter/Timer Triggering 660x
http://exchange.ni.com/servlet/ProcessRequest?RHIVEID=101&RNAME=ViewQuestion&HOID=506500000008000000B2300000&ECategory=Measurement+Hardware.Counter%2FTimer
Anyway, I hope that helps. Have a good day.
Ron