Hi Bill -
It looks like you need discontinuous FSK output from a square-wave generation. Our counter chips can only generate an entire pulse at a time, so they won't be able to "immediately" respond to a trigger input.
I think your best bet is to look into our Signal Sources. We have arbitrary waveform generators with scripting capabilities that can almost certainly meet your application demands. I recommend that you contact NI by phone to talk out the technical details of the application, so we can figure out the solution live. If you know your sales representative, feel free to call them and have them put you through to the Applications Engineers.
David Staab, CLA
Staff Systems Engineer
National Instruments