Hi,
The minimum pulse with you can reach with the 1 ms period is of 10 microseconds.
The channels on the FP-PWM-420 cannot be exactly sinchronized between each other, the pulse generation mechanism of the FP-PWM-520 is controlled through sofware, not hardware, so we cannot assure that the pulses will start at the same time... Even if you create a multi-channel item to write to both channels, you will still have a difference of phase between the channels (1 - 2 ms)...
You can also look at this discussion forum document here :
http://exchange.ni.com/servlet/ProcessRequest?RHIVEID=101&RNAME=ViewQuestion&HOID=506500000008000000D25B0000&ECategory=Distributed+I%2FO.FieldPoint
I hope it helps
Andre Oliveira