Stefano,
I would like to help you, but I need to get some details first. What version of Windows do you have? Also, what version of the NI-488.2 drivers are you running? Check out http://www.ni.com/support/gpib/versions.htm to make sure that you have the right version. What is the "3.1 software" that you got to work?
If you're using MAX (Measurement & Automation Explorer), try hitting F5 on your keyboard to refresh the devices. I'm not sure if you have the right driver version, since MAX is a much newer program than Windows 3.1. Do you get any error numbers/messages?
A.S.
Anu Saha
Academic Product Marketing Engineer
National Instruments