The one place I use Stacked Sequences is for setting up various parameters at the start of a vi. I usually have several frames, especially if the setup is complex, with each frame performing a different class of operations (reading from config files, checking for hardware, setting control appearances, etc.). And often, I find that multiple frames need to plug values into clusters at different points in the setup sequence. Sequence Locals for passing these clusters from frame to frame are terrible since wires have to backwards to come out of the locals, and the result is ugly and non-intuitive. So why not not have Shift registers, just like in loops. Much nicer. It might make Stacked Sequences more acceptable.
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The Stacked Sequence Structure was removed from Quick Drop/palettes in LabVIEW 2014, and NI has no plans to include it in LabVIEW NXG.