Christian,
I don't believe Jeremy answered your question. I am runnig LV6.1 and have replicated your problem in the attached vi. Though I could not get your vi to run because of a missing subvi I am pretty sure I understand what is going on. If you will look at my attached vi you will see 2 waveform charts using the same input. Both of them have digital indication enabled, however the second waveform has only one plot and one digital indicator because it has been converted from a cluster to an array. The input to your waveform chart is a 1-d array of waveform and is behaving in this same manner.
Hope this helps
Gold