Are you having trouble representing the data in parallel form in the file, or is it that you are having trouble actually graphing the data? It sounds like you are having trouble specifically with graphing the data. If you want the data to plot all at the same time, you would want to read the entire file at once, getting an array of waveforms, and plot them all to the graph at the same time. If you read the waveform one at a time and then graph each as you read it, the the graph will display only the plot that was last sent to it.