If I understood you correctly, you want to, say control pressure, but you want the pid.vi that controls pressure to be placed in sevral loops, one time, this loop does this, another time, the other loop takes over and does that etc..
Because the vi is reentrant, each call of the PID will have its own data space and there will be no interaction between loops placed in several locations. The above senario will not work.
Just have one loop to do control, and pass data to it from the other loops.