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Labview project functions differently when compiled

By using the debugger, I have found out more information.  Like I said before, I have multiple busses that I'm driving.  Each bus has its own VI.  I have discovered that the VI that doesn't work simply doesn't get run.  In the debugger it is shown as "Waiting to Run".  My top level VI is nothing more than the sub VI's for each bus.  There is no reason why one wouldn't start.  It starts every time when I run in development mode.  I'm sorry but I cannot publish any source.
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Is there anything different about the subVI that isn't running?  Are you allowing enough sleep time for all three to run simultaneously?  Is the subVI waiting for an input that never arrives?

Just some shots in the dark without seeing any of the code.

David_B
Applications Engineer
National Instruments
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