Right, the max counters on the newer boards is 2. The older legacy cards had 3 counters and the AI/AOs. The only difficulty I've found with stacking a bunch of cards into a box is running out of DMAs and IRQs. That is to say, with a video card, and ethernet card, a sound card, all the normal stuff (mouse, keyboard, system resources) and 4 DAQ cards (aside from box crowding), you can find yourself short of Interupt Request and Direct Memory Access settings to accomodate all this, which means resource conflicts as multiple cards get assigned duplicate settings. Performance wise, I haven't seen any issue with doing this.
2006 Ultimate LabVIEW G-eek.