Bumer,
I have tried something similar (using SetControlValue to set the refnum) and all it did was to crash LabVIEW.
This is not a definite answer but first I doubt that a COM object refnum is a valid datatype that can be passed in a call. Second, I also doubt that an object refnum created in one process (wscript.exe) can be used in another (labview.exe). I think that you have to create, manipulate, release an object in the process that created it.