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RT Linux executable wont run/ file permissions

I am having an issue where whenever I choose "run as startup" and reboot on a rt target but the executable doesnt seem to run. 

 

I have no problem running as source. And I have an old executable that I can copy onto the rt target and this works fine as well but I cant deploy anything new.

 

I use git so I can see there is no difference between the project or start up vi or ANY vi or ctl or lvlibp or anything in the project from now and the old executable. However I noticed the diff of the new executable created its different than the old one. 

 

I also noticed that every time I try to redeploy the file permissions change on the rt target for the executable .. I am not sure if this is related.

 

It feels like the rt is rejecting my new build. Has anyone experienced anything like this? I was constantly building and deploying and running start up exe for weeks and it always worked but after one day it just stopped working. 

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