As long as you rename one of the two VI's there should not be a problem running them simultaneously. (I'm not sure why copying to another name should be a problem in your case) I've done this for years successfully with two SR830 Lockin-amps using the gpib bus at reasonably low speeds. If you're pressing the limits, speed wise, you may need to use a semaphore arrangement, to prevent GPIB errors. I'd suggest just trying the dual vi first....it certainly is simpler!
eric
Eric P. Nichols
P.O. Box 56235
North Pole, AK 99705