I think the easiest thing would be to place a modal subVI in the same place where you do the reading\writing and have the VI end using a timer. You could even make a progress bar.
If the time isn't constant, you could have the message box in your VI and just make it visible\invisible when the process starts\ends. To do this, you need to create a property node. Right click on the control or the terminal and select Create>>Property Node. Then, select Visible and wire T or F into it, accordingly.
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