Hi,
If I've got the problem you have the input signal S_in(t) and the transfer function of the system H(t) and you want to find the output signal S_out(t).
So the output will be proportional to the convolution of S_in(t) and H(t):
S_out(t) ~ Conv(S_in(t), H(t)).
You can find the convolution VI at
'Functions->Analyze->Signal Processing->Time Domain->Convolution.vi"
Good luck.
Oleg Chutko.