Hello;
As your board only has two counters, you will be able to read only two sqaure waves at one time. You have two options at this point:
1) To acquire a PCI-6602 which has 8 counters
2) Do the measurement of the first two and then take the measurements of the last two square waves.
To do that, you can create a Labview sequence in which the first sequence does the first two square waves and the second sequence does the last two waves.
You can find a Labview example at Search Examples->I/O Interfaces->Data Acquisition->Counters->Pulse-Width Measurement->Measure Pulse (DAQ STC).vi, which does the width measurement. You can cheange that example to work with two pfi lines instead of only one, and create a sequence of events to do the same measurement on the last
two waves.
Hope this helps.
Filipe