I regret really, but I have no any experience working with ASYST and also I must admit that I'm not at all very familar with FFT algorithms, that's why I've only try to give you an advice as a reference to one of the NI coding challenges.
But, anywhere, there is no possibility to change existing NI FFT c-code. At the same time, I assume that you can apply changes to the resulting FFT data after the transform (i.e.renormalize it, may be I'm wrong but it seems to me that it is possible to do this at this point). If you prefer, you can also try to implement your own FFT code (preferably also using c, as if you'll do this in labview, this will work much slower), but it doesn't look like a necessary work.
Sorry for my poor english