Hi, Ben.
I've written phase noise measurement algorithms for a number of NI data acquisition cards. Conceptually it's fairly simple, but the implementation turns out to be complicated, as it involves a digital downconverter, either in hardware or host software.
Is there a particular board you'd like to use? Depending on the model, I may have some example code already written, or I may be able to cobble something together fairly easily.
EBL