From what I can see it looks like you want to configure both of your
input channels as a single task i.e. if you wire a comma delimited
string list of channels to the Physical Channels input of the Daqmx
create channel.vi. What this means is that any reads you do on these
two channels will now be perfectly synced by the daq card, so all you
have to worry about is syncing your software.
I've attached a .vi to show what I mean.
D Clark
David Clark
CLA | CTA
Genesee Technologies Ltd
Hampshire, England