I am afraid the welding or the introduction of a third metal will not be the problem, as long as both tips are at the same temperature. The following is taken out of the Industrial Heating Website:
http://www.industrialheating.com/CDA/ArticleInformation/features/BNP__Features__Item/0,2832,81512,00.html
"Although a mechanical joint such as a twist can provide the necessary contact between the two dissimilar wires for the thermocouple to operate, a more robust connection is generally needed for extended service life. The Law of Intermediate Temperatures states if two dissimilar homogeneous metals produce a thermal emf value, it will remain constant if a third material is introduced into the circuit, provided both ends of that material are at the same tem
perature. This permits welding of the hot junction."
So I would check the thermocouple connections and the temperature logger. This KIC logger is not a National Instruments product, we provide systems that will allow you to log data directly from your PC with accuracies of up to .1 Degree C with standard thermocouples. (using system calibration techniques)
I hope this helps,
Alejandro Asenjo
National Instruments
Application Engineer