Before CVI2012 a conditional breakpoint could be toggled between enabled and disabled with a single mouse click. The behaviour changed in that version so that a mouse click now deletes the breakpoint.
I understand that this is more consistent with the behaviour of an unconditional breakpoint, which is set and deleted with the mouse click; I understand also that Ctrl+F9 shortcut key has been introduced to toggle breakpoint state, but in my opinion this new arrangement is less user friendly than before.
The risk is that once you set a conditional breakpoint, possibily with a complicated condition and/or pass count set to match some particular operating condition, you can delete it with a single click while you would maybe simply disabling it.
The same applies if you press F9, so I suggest additionally that when F9 key is applied to a conditional breakpoint it disables the breakpoint instead of deleting it.
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