We haven't seen this before in the 6.0 release. We saw something similar to this in beta with the UI converter that would update your User Interface to Lab-style controls. I'm really not sure what could have caused it. What do you mean when you say you can change the controls, then back again? You may be able to solve this by outputting your UIR to text and making some edits and reloading, but I have to know what you are doing to fix the problem.
Also, do you have a backup of the UIR that is OK. If so, what could be causing this is the Auto-scaling setting of the panel. Load your backup and turn off panel scaling before editing a control.
Best Regards,
Chris Matthews
National Instruments