Keli,
We can guess from your description that you are performing PID control, if this is the case then you don't have many options, a possible solution will be to eliminate the timers or timing control function inside the loop, that is, get the whole processor speed from your computer, another good practise could be to separate in two different threads the user interface from the operation program, or best even to eliminate the user interface.
You are using LabWindows, if you really feel the need for faster control operations you may want to consider LabVIEW RT (real time) which performs a faster PID control as for real time.
But in the case of your LabWindows it will most likely be system dependent even though you make your code as faster as possible.
Good Lu
ck!
Nestor Sanchez
Applications Engineer
National Instruments
Nestor