I would suggest using the lower level NI-DAQ functions instead of the Easy I/O functions. (You have a lot more flexablity this way.) To configure seperate ports use the function DIG_Prt_Config, then instead of using WriteToDigitalPort, use DIG_OutPort. Here is an example that writes to one port using these NI-DAQ functions. All you need to do to write to two ports is add two lines in; another DIG_Prt_Config and another DIG_Out_Port.
Good luck and let me know if this does not work for you.
Brian