Hello,
You can use either one of four Contol lines or one of four Trigger lines on the PCI 1409 to generate TTL signals. You can find the corresponding pin by looking at the I/O Connector Pin Assignments figure (figure 4-2) on page 30 of the PCI 1409 User Manual.
I hope this helps!
Regards,
Yusuf C.
Applications Engineering
National Instruments