Hi Wu,
Can we get some more information about your setup? How are you connecting your signal? What is the grounding scheme (of your signal and DAQ hardware)? What SCXI board are you using (the 1303 is the terminal block)? What VI are you using to obtion the signal in LabVIEW?
You said that you applied an amplifier before your signals go into the block, what type of amplifier is it? Does the SCXI board you have do amplification?
When you say that the signal is different, how is it different? Is it offset by a constant voltage? Are you seeing random noise but the signal shape is the same? Is it just plain wrong?
Thanks,
Sal