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how to maintian the same base line

I am using SCXI-1202 with terminal block SCXI-1303 to measure temperature by thermocouples and microvolts by heat flux seosor. Before the signal gets to the SCXI-1102, I applied an amplifier. The signals are good enough.

For my case, I need to do some signal analysis. The ideal signals are like this: the baseines for different conditions should be similar; the differences come form the range of the fluctuation.

However, when I changed the operating conditions, the base line of the signal changed a lot, and the fluctuations did not change much.

Is there anyway to fix the baselines and keep the fluctuations change base of the measurements?
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Hi,

Could you explain in more detail what you mean by operating conditions? Also, is this code that you wrote, or is it a shipping example? Are you using LabVIEW? Which DAQ card are you using? Could you post the code that you are seeing this fluctuation in. Thanks.

George
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