Shishya,
The breakpoint on the PXI-7358 is a position compare output, so it is what you are looking for. The delay is minimal since the compare is done in HW (FPGA). The delay in HW is in the nanosecond range I believe.
The NI-735x boards have a couple of really nice breakpoint features. Periodic breakpoints allow you to trigger breakpoints up to 4 Mhz. This is useful when all your breakpoints are equally spaced. Once set up in your software, you do not have to keep re-enabling the breakpoint. This is handled by the motion controller.
Buffered breakpoints allow for a 2 kHz breakpoint frequency. This is useful when your breakpoints are not equally spaced. In this mode you can send a buffer of breakpoints to the motion controller and the motion controller will enable each breakpoint in order. If needed you can use a circular buffer to allow for an infinite stream of breakpoints.
These controllers also have the standard single shot breakpoint.
Thanks,
Rodger S.