Hello,
First of all, analog feedback can not be used as secondary feedback. When you are running on analog signal as your primary feedback, you should be able read encoder data calling the Read Encoder Position.flx. When you are running on encoder as your primary feedback, you should be able read analog data calling the Read ADC.flx. If you do the enabling/disabling properly when you are switching from one feedback mode to other, you should be able to read all the signals.
Hope this helps!
Regards,
Yusuf C.
Applications Engineering
National Instruments