Hi,
Whoops! Sorry I posted the same picture!

I have attached two more screen shots, to show the problem. I'm feeding the output from a signal generator to the a0 channel, and channels a1 & a2 are shorted to earth. I expect that the trace displaying the signal will always be tthe same colour. However, as I mentioned in my post, it seems as if a buffer is not being reset and so the data for the channels is not in the same position as observed by a probe placed on the output of the DAQ Assistant.
I have also tried to use the low level task option rather than the express vi but I get the same result, see attached screen shot.
I'm using LabView 8.5 Developer Suite.
Hope that this clarifies the problem.
Thanks