Kevin, Dan,
That's right, maybe aliminating the 1st element of the read for the 1st channel is not 100% reliable. I added a delay in my code as suggested by Dan to allow enough time for the signal in the AO to reach the 1st AI before the next update of the timing clock. So far it's working perfectly fine (I added a delay of 200 ticks).
Thanks a lot,
Pedro.