The answer to your question is dependent on your motor/motor controller and the inputs that it needs. Are you using a stepper motor controller? The PCI-6036E probably won't be able to supply enough current to power your motor (max 5mA) by itself, so you will probably need a stepper motor controller. With the 6036E, you do have 2 analog outputs, 8 digital I/O, and 2 counters (can be used for pulse train generation). Have you considered an NI Motion Control Board? ni.com/motion
-Alan A.