Hi Michael,
I am guessing you are referring to 'Warm up iterations' when you say 'warm up samples'. The are two way to access the DAQmx RT Property node for Warm up iterations. One way is to drop the DAQmx RT property node on the block diagram, single click on the white portion of the property node, five options should pull up. And one of them should be Warm up iterations. The other way to access is to pull down the white part. Then should be able to see all the five options.
I also wanted to mention that if you do use warm up iterations, it can change your loop iterations resulting in some of them running late due to jitter. One outcome of this is that it can halt your simulation itself (this is when you are not in RT). This happens because there is nothing in the buffer to use for the simulation and it waits until you get new data to write to the simulation. If you are in RT, SIT overwrites the buffer resulting in gaps in the data. Please check
this help file.
What RT hardware are you using with this? Are you still using SIT when you are not in RT portion of your program?
Warm regards,
Karunya R
National Instruments
Applications Engineer