Ah I see now. In this case their is an easier way to go about this. Use the second counter also in continuous pulse train generation mode. Only use the output from your first counter (the one that is driving the stepper motor) as it's source. By default, the output mode will toggle, but you can change the mode to pulsed output. (Such that at the end of each pulse spec you will get a short pulse) I am not sure which development environment you are using, but the
Pulse Train Generation on a 660X Device with Pulsed Output Mode example shows how this is done. It's basic
ally the same in LabVIEW too. You use the Set Attribute VI to change the output mode to "pulse." The counter will pulse at the end of each "pulse spec" register.
I hope I'm making sense. Let me know if I'm not.
Russell
Applications Engineer
National Instruments
http://www.ni.com/support