Hi!
It is correct that you only have the choice between ctr0 and ctr1, but every counter has three lines
Source, Gate and Out.
If you want to generate a PWM then is the signal on the out-line available...
If you want to count digital events then you have to connect the wire to the source-line.
Try the example "Count Digital Events.vi" (C:\Programme\National Instruments\LabVIEW7.x\examples\DAQmx\Counter\Count Digital Events.llb)
regards,
ThSa