Hi William,
Please help me further understand what you are trying to do. If I'm correct, it sounds like you have set up 9 of the DIO lines on the PXI-6551 to be inputs, but what do you mean by running with digital patterns at 100kHz? Are you generating patterns with LabVIEW? Are you using external equipment to generate patterns at 100kHz, and connecting your external equipment to the 9 digital input lines on the PXI-6551? Does your acquisition on the PXI-6551 trigger off the 100kHz pattern? What do you mean by connecting the MIO? Are you using another DAQ card? Please clarify your setup.
Also, I don't quite understand what you are looking for ideas on. Perhaps this will become more evident upon clarification of you set up, but I can't
quite tell if you are having trouble programming, setting up the hardware, understanding specs of the board(s), etc. Please let me know as best as you can how I can help you out. Have a great day!
Logan S.