What you are working to do, is to get all the signals to share the same ground. You can use the NI SCC series signal conditioning, or 5B style signal conditioning to bring in inputs, isolate them, and then host them to a single ended input. This idea may be of use to you.
Preston Johnson
Solutions Manager, Industrial IoT: Condition Monitoring and Predictive Analytics
cbt
512 431 2371
preston.johnson@cbtechinc