Are the accelerometers connected such that one of the accelerometers is mounted to the table and the other to the device under test (DUT)? If so, I would expect the Getting Started with Swept Sine example to work for your application with no code changes. If both accelerometers are mounted to the DUT, then you need to use an example (such as SVXMPL_Baseband FRF (DAQmx AI and AO).vi) that can readily support frequency response measurements with multiple responses, or you could run the swept sine example twice - once to measure the FRF1 (accelerometer1/acquired stimulus) and once again to measure FRF2 (accelerometer2/acquired stimulus).
If you can attach a diagram of the measurement system (especially to indicate whether both accelerometers are used to measure acceleration response or whether one accelerometer is used to measure the excitation acceleration applied to the DUT), we can help you to use the Sound and Vibration examples. Are you using the current version of the Sound and Vibration Toolkit (5.0)?
Doug
Enthusiast for LabVIEW, DAQmx, and Sound and Vibration