Are you calling "Edit Display" in your DD menu? As I know, the Configurator 3.1 version can handle "Edit Display" properly. I suggest you send your DD and CFF files to "fieldbus.support@ni.com" for further technical support from NI.
On the other hand, you might be able to download the Configurator 3.1 Evaluation version from "http://www.ni.com/support/fbussupp", which supports creating virtual devices/blocks with CFF and DD files. You can try on that and see whether it helps in 3.1 version.