I am fairly sure you can do this using one of the synchronization signals (in the property node under Synchronization). I believe Start Trigger (Acq. Arm) Source will start the acquistion and a normal trigger will stop it. So, set the Start Trigger to one of the external PFI lines (make sure you use the VAL_RTSI... format for the string, see the online help). Set the "normal" trigger to external, falling edge, AC coupled, level=0 and the reference position to 100%. Wire the trigger pulse into both the Start Trigger source and external trigger inputs. To kick this off, initiate an acquisition. When done, set the Fetch Relative To to Start and fetch all the points. You will need to initiate again to rearm the system.
WARNING: I have not tr
ied this and there may be some errors in procedure. For example, you may need to use Arm Reference Trigger Source instead of Start Trigger (Acq. Arm) Source. However, you should be able to get there with a bit of playing around. If you run into an insurmountable problem, reply to this post and I will find time to help you out more.