If you use the fixed-personality driver, and you are feeling a little bit brave, you should be able to use ni5640R Configure Timebase.vi. It can be found (at least on my computer) at:
C:\Program Files\National Instruments\LabVIEW 8.2\instr.lib\ni5640R\Driver\NI-5640R VIs
Leave the defaults as they are, except change as follows:
Ref Divider (M) = 2 (for 2 MHz)
SMB Ext Ref Enable = True
VCXO Control = PLL
CP Enable = True
That should be everything, to the best of my memory. You may have to enable the Invert CP bit.
Hope this helps,
Ed