Hey jc8715,
When you say the device shuts off, does it actually power down or does it simply stop acquiring data? Do you receive an error message? Also, what external connections do you have to the device? I have seen a similar situation where a USB device was powering down after a certain amount of time because the 5V supply out of it was powering a relay. This caused the device to overdraw current after some time and shutdown. You may want to try testing this by removing any external connections and seeing if you can reproduce the results.
Regards,
Chris Delvizis
National Instruments