Mike,
Take a look at the DAQmx Trigger function. I use the Start Analog
Edge option in a system very similar to yours. I do not know a
way to simultaniously read and monitor the trigger for a "stop"
signal.
What you could do is set your number of samples high enough that you
have a resonable certanty of capturing all the required data, scan the
trigger channel data for the third downward edge, then truncate all the
signals at that point, and output to file / graph. I recomend you
change the DAQmx Read to output a 1D waveform. Labview has a wide
variety of tools for analyzing waveforms and they can also be easily
truncated and written to file.
I might be able to rig up a sample if you need it.
=jason