Dear Shrek,
With regards to your host loop, it should allow you to conect and reconnect at will as it is using the TCP/IP protocol.
TCL/NPL are both processing on the RT target which is doing all the acquisition so there is no point stopping the loops, you should keep them running. If you stop the TCL loop then you will leave the NPL loop running, which can cause problems because you are only stopping half the vi running.
Kind Regards
Louis Price
Applications Engineer
NI UK