I would recommend upgrading to LabVIEW 7.0 for a couple of reasons. First, LabVIEW 6.1 introduced remote front panels which allows you to control a VI through a web browser. Setting up remote front panels is very simple and that alone is worth the upgrade. As far a using the parallel port you can use VISA to send/receive commands via the parellel port if you are using a motor controller with a parellel interface. If you are talking about using the port on a bit level to control the motor, LabVIEW 7.0 ships which an example of how to do basic digital input output with the parallel port.
Regards,
JR A.
Application Engineer
National Instruments