Sure (although it is probably not the information you would like to hear)
.
The Host VI interacts with the FPGA VI through the RIO Driver, which
gets installed with the NI-RIO distribution. When the FPGA gets
compiled, registers for the controls, indicators and control signals
get created, and the NI-RIO driver in combination with LV FPGA Host
Support take care of handling all the communication to transfer data
into and out of the FPGA through those registers. Unfortunately, the
details of that communication are not accessible to customers.
All I can say is that we know about the use case for not using a Host
VI to communicate with an FPGA VI, and that engineering is actively
looking into making this possible, but there is no timeframe for this
to happen yet.
Sorry for not bringing much more light to the discussion.
JMota
National Instruments