If you save your data as a WAVEFORM ARRAY, then you can index the array, and use the Max/Min vi (in the waveform operations toolbox) to extract the max value (and time thereof, if desired) of each waveform. This is not the zippiest process in the world, but it should handle your data rates adequately.
Good Luck!
Eric
Eric P. Nichols
P.O. Box 56235
North Pole, AK 99705