Ok, I think I see what you mean. Actually, this in some ways is the same issue as the second question. LV keeps track of the control's current appearance, location, visibility, etc. In general, it doesn't distinguish between the way it was designed and the ways you changed it programatically.
Now here is a great big caveat: I say "In general..." because LV is 100% consistent. Some properties it saves and some it doesn't. For example, if you change the format of a plot's axis programatically and then close the VI, when you reopen it, it will be in the original state.
Bottom line, if it's critical that a control be a particular way when you start the VI up, reset it in code before the VI terminates.
Mike...