The 7041's CompactFlash is accessible as a drive (C:) through LabVIEW's file I/O functions. You can open/create/replace files on the 7041, just as you would on the host by calling file I/O functions in your downloaded VI.
Once the data is on C:,
FTP to the 7041 from the host to retrieve your files. You can FTP programmatically in LabVIEW if you have the internet toolkit. If you don't have the internet toolkit, you can use System Exec to run your FTP commands.
If you prefer not to use FTP, you can transfer the data via TCP, UDP, or Datasocket, but that will require some additional programming.